Package: gompertztrunc 0.1.2

Maria Osborne

gompertztrunc: Conducting Maximum Likelihood Estimation with Truncated Mortality Data

Estimates hazard ratios and mortality differentials for doubly-truncated data without population denominators. This method is described in Goldstein et al. (2023) <doi:10.1007/s11113-023-09785-z>.

Authors:Casey Breen [aut], Maria Osborne [aut, cre], Joshua R. Goldstein [aut]

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gompertztrunc.pdf |gompertztrunc.html✨
gompertztrunc/json (API)
NEWS

# Install 'gompertztrunc' in R:

install.packages('gompertztrunc', repos = c('https://caseybreen.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/caseybreen/gompertztrunc/issues

Datasets:

bunmd_demo - Demo BUNMD Data Set
numident_demo - Demo Numident Data Set
sim_data - Simulated mortality data set

On CRAN:

9 exports 1.09 score 59 dependencies 7 scripts 1.1k downloads

Last updated 7 months agofrom:21d43e207d. Checks:OK: 7. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Aug 26 2024
R-4.5-win	OK	Aug 26 2024
R-4.5-linux	OK	Aug 26 2024
R-4.4-win	OK	Aug 26 2024
R-4.4-mac	OK	Aug 26 2024
R-4.3-win	OK	Aug 26 2024
R-4.3-mac	OK	Aug 26 2024

Exports:%>%convert_hazards_to_ex diagnostic_plot diagnostic_plot_hazard get.par.start gompertz_mle gompertztrunc_simu hazard_ratio_to_le negLL_function

Dependencies:assertthat backports bbmle bdsmatrix BH broom cli colorspace cowplot cpp11 data.table deSolve dplyr fansi farver fastGHQuad flexsurv generics ggplot2 ggsci glue gtable isoband labeling lattice lifecycle magrittr MASS Matrix mgcv modelr mstate muhaz munsell mvtnorm nlme numDeriv pillar pkgconfig purrr quadprog R6 RColorBrewer Rcpp RcppArmadillo rlang rstpm2 scales statmod stringi stringr survival tibble tidyr tidyselect utf8 vctrs viridisLite withr

Analyzing doubly-truncated mortality data using the gompertztrunc package

Casey Breen ([email protected]), Maria Osborne ([email protected])

Rendered fromgompertztrunc_vignette.Rmdusingknitr::rmarkdownon Aug 26 2024.

Last update: 2023-03-18
Started: 2022-01-26

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Demo BUNMD Data Set	bunmd_demo
Convert hazard ratios to life expectancy	convert_hazards_to_ex
Create diagnostic plots	diagnostic_plot
Create diagnostic plot (hazard scale)	diagnostic_plot_hazard
Get starting values for parameters	get.par.start
Gompertz MLE function	gompertz_mle
Simulate Gompertzian death distribution	gompertztrunc_simu
Translate a single hazard ratio to remaining life expectancy	hazard_ratio_to_le
Gompertz Negative Log Likelihood Function	negLL_function
Demo Numident Data Set	numident_demo
Simulated mortality data set	sim_data