{ "_id": "6ac636a2f511ae58c09a7e62", "Type": "Package", "Package": "gompertztrunc", "Title": "Conducting Maximum Likelihood Estimation with Truncated\nMortality Data", "Version": "0.1.2", "Authors@R": "c(\nperson(\"Casey\", \"Breen\", , \"caseybreen@berkeley.edu\", role = \"aut\",\ncomment = c(ORCID = \"https://orcid.org/0000-0001-9114-981X\")),\nperson(\"Maria\", \"Osborne\", , \"mariaosborne@berkeley.edu\", role = c(\"aut\", \"cre\")),\nperson(\"Joshua R.\", \"Goldstein\", role = \"aut\")\n)", "Maintainer": "Maria Osborne ", "Description": "Estimates hazard ratios and mortality differentials for\ndoubly-truncated data without population denominators. This\nmethod is described in Goldstein et al. (2023)\n.", "License": "GPL (>= 3)", "URL": "https://caseybreen.github.io/gompertztrunc/,\nhttps://github.com/caseybreen/gompertztrunc", "BugReports": "https://github.com/caseybreen/gompertztrunc/issues", "VignetteBuilder": "knitr", "Encoding": "UTF-8", "LazyData": "true", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.1", "Config/pak/sysreqs": "libicu-dev", "Repository": "https://caseybreen.r-universe.dev", "Date/Publication": "2024-02-28 18:24:30 UTC", "RemoteUrl": "https://github.com/caseybreen/gompertztrunc", "RemoteRef": "HEAD", "RemoteSha": "21d43e207df7222e46366c06babe542aa4e93c00", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-07 09:50:13 UTC", "User": "root" }, "Author": "Casey Breen [aut] (ORCID: ),\nMaria Osborne [aut, cre],\nJoshua R. Goldstein [aut]", "_user": "caseybreen", "_type": "src", "_file": "gompertztrunc_0.1.2.tar.gz", "_fileid": "https://r2.ropensci.org/ddfcc9da0c4688f2eebe6fe8e43ea0f1731d8b35da5e26282eeaf6640f2db18f", "_filesize": 4227747, "_sha256": "ddfcc9da0c4688f2eebe6fe8e43ea0f1731d8b35da5e26282eeaf6640f2db18f", "_expires": "2027-01-15T12:10:08.000Z", "_created": "2026-10-07T09:50:13.000Z", "_published": "2026-10-07T12:10:10.700Z", "_buildurl": "https://github.com/r-universe/caseybreen/actions/runs/37602139666", "_status": "success", "_host": "GitHub-Actions", "_jobs": [ { "job": 112732883503, "time": 150, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11473702566" }, { "job": 112732883582, "time": 138, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11472939693" }, { "job": 112732883495, "time": 171, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "11481475213" }, { "job": 112732883323, "time": 164, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "11481440109" }, { "job": 112729904656, "time": 266, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11473642406" }, { "job": 112732883513, "time": 110, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11474081406" }, { "job": 112732883324, "time": 92, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11473099111" }, { "job": 112732883411, "time": 86, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "OK", "artifact": "11474096271" }, { "job": 112732883398, "time": 127, "config": "windows-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11473887012" } ], "_upstream": "https://github.com/caseybreen/gompertztrunc", "_commit": { "id": "21d43e207df7222e46366c06babe542aa4e93c00", "author": "Maria Osborne <67436798+mariaosborne@users.noreply.github.com>", "committer": "GitHub ", "message": "Update cran-comments.md", "time": 1709144670 }, "_maintainer": { "name": "Maria Osborne", "email": "mariaosborne@berkeley.edu" }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "broom", "role": "Imports" }, { "package": "cowplot", "role": "Imports" }, { "package": "data.table", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "flexsurv", "role": "Imports" }, { "package": "ggplot2", "role": "Imports" }, { "package": "ggsci", "role": "Imports" }, { "package": "grid", "role": "Imports" }, { "package": "magrittr", "role": "Imports" }, { "package": "modelr", "role": "Imports" }, { "package": "rlang", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "stringr", "role": "Imports" }, { "package": "tibble", "role": "Imports" }, { "package": "tidyr", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "socviz", "role": "Suggests" }, { "package": "tidyverse", "role": "Suggests" } ], "_owner": "caseybreen", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 1, "_contributors": [ { "user": "caseybreen", "count": 63, "uuid": 26234849 }, { "user": "mariaosborne", "count": 22, "uuid": 67436798 }, { "user": "olivroy", "count": 2, "uuid": 52606734 } ], "_userbio": { "uuid": 26234849, "type": "user", "name": "Casey Breen", "followers": 20 }, "_downloads": { "count": 469, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/gompertztrunc" }, "_devurl": "https://github.com/caseybreen/gompertztrunc", "_pkgdown": "https://caseybreen.github.io/gompertztrunc/", "_searchresults": 10, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/gompertztrunc.html", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md" ], "_homeurl": "https://github.com/caseybreen/gompertztrunc", "_realowner": "caseybreen", "_cranurl": true, "_releases": [ { "version": "0.1.0", "date": "2022-08-17" }, { "version": "0.1.1", "date": "2022-12-23" }, { "version": "0.1.2", "date": "2024-02-29" } ], "_exports": [ "%>%", "convert_hazards_to_ex", "diagnostic_plot", "diagnostic_plot_hazard", "get.par.start", "gompertz_mle", "gompertztrunc_simu", "hazard_ratio_to_le", "negLL_function" ], "_datasets": [ { "name": "bunmd_demo", "title": "Demo BUNMD Data Set", "object": "bunmd_demo", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "ssn", "bpl_string", "death_age", "byear", "dyear", "age_first_application" ], "rows": 81002, "table": true, "tojson": true }, { "name": "numident_demo", "title": "Demo Numident Data Set", "object": "numident_demo", "class": [ "data.table", "data.frame" ], "fields": [ "histid", "bmonth", "byear", "dmonth", "dyear", "death_age", "weight", "zip_residence", "perwt", "age", "sex", "bpl", "mbpl", "fbpl", "educd", "empstatd", "hispan", "incnonwg", "incwage", "marst", "nativity", "occ", "occscore", "ownershp", "pernum", "race", "rent", "serial", "statefip", "urban", "educ_yrs" ], "rows": 62899, "table": true, "tojson": true }, { "name": "sim_data", "title": "Simulated mortality data set", "object": "sim_data", "class": [ "data.table", "data.frame" ], "fields": [ "aod", "byear", "dyear", "temp", "sex", "isSouth" ], "rows": 6736, "table": true, "tojson": true } ], "_help": [ { "page": "bunmd_demo", "title": "Demo BUNMD Data Set", "topics": [ "bunmd_demo" ] }, { "page": "convert_hazards_to_ex", "title": "Convert hazard ratios to life expectancy", "topics": [ "convert_hazards_to_ex" ] }, { "page": "diagnostic_plot", "title": "Create diagnostic plots", "topics": [ "diagnostic_plot" ] }, { "page": "diagnostic_plot_hazard", "title": "Create diagnostic plot (hazard scale)", "topics": [ "diagnostic_plot_hazard" ] }, { "page": "get.par.start", "title": "Get starting values for parameters", "topics": [ "get.par.start" ] }, { "page": "gompertz_mle", "title": "Gompertz MLE function", "topics": [ "gompertz_mle" ] }, { "page": "gompertztrunc_simu", "title": "Simulate Gompertzian death distribution", "topics": [ "gompertztrunc_simu" ] }, { "page": "hazard_ratio_to_le", "title": "Translate a single hazard ratio to remaining life expectancy", "topics": [ "hazard_ratio_to_le" ] }, { "page": "negLL_function", "title": "Gompertz Negative Log Likelihood Function", "topics": [ "negLL_function" ] }, { "page": "numident_demo", "title": "Demo Numident Data Set", "topics": [ "numident_demo" ] }, { "page": "sim_data", "title": "Simulated mortality data set", "topics": [ "sim_data" ] } ], "_readme": "https://github.com/caseybreen/gompertztrunc/raw/HEAD/readme.md", "_rundeps": [ "assertthat", "backports", "bbmle", "bdsmatrix", "broom", "cli", "cowplot", "cpp11", "data.table", "deSolve", "dplyr", "farver", "fastGHQuad", "flexsurv", "generics", "ggplot2", "ggsci", "glue", "gtable", "isoband", "labeling", "lattice", "lifecycle", "lsoda", "magrittr", "MASS", "Matrix", "mgcv", "modelr", "mstate", "muhaz", "mvtnorm", "nlme", "numDeriv", "pillar", "pkgconfig", "purrr", "quadprog", "R6", "RColorBrewer", "Rcpp", "RcppArmadillo", "rlang", "rstpm2", "S7", "scales", "statmod", "stringi", "stringr", "survival", "tibble", "tidyr", "tidyselect", "utf8", "vctrs", "viridisLite", "withr" ], "_vignettes": [ { "source": "gompertztrunc_vignette.Rmd", "filename": "gompertztrunc_vignette.html", "title": "Analyzing doubly-truncated mortality data using the gompertztrunc package", "author": "Casey Breen (caseybreen@berkeley.edu), Maria Osborne (mariaosborne@berkeley.edu)", "engine": "knitr::rmarkdown", "headings": [ "Summary", "Background", "Summary of Parametric Gompertz Approach", "Setup", "Case Study I: Simulated Data", "Case Study II: Real-World Example with BUNMD Data", "Linear regression approach", "Visualize Results", "Diagnostic Plots", "Case Study III: Education and longevity analysis with person-weights", "Person-weights", "Summary and Limitations" ], "created": "2022-01-26 16:49:03", "modified": "2023-03-18 22:44:42", "commits": 19 } ], "_score": 4, "_indexed": true, "_nocasepkg": "gompertztrunc", "_universes": [ "caseybreen" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.2", "date": "2026-10-07T09:52:41.000Z", "distro": "resolute", "commit": "21d43e207df7222e46366c06babe542aa4e93c00", "fileid": "https://r2.ropensci.org/732364ad0974eca07235686ede240f03441e3fd8a5855b5cdc5904c6e6741420", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/caseybreen/actions/runs/37602139666" }, { "r": "4.6.1", "os": "linux", "version": "0.1.2", "date": "2026-10-07T09:52:34.000Z", "distro": "resolute", "commit": "21d43e207df7222e46366c06babe542aa4e93c00", "fileid": "https://r2.ropensci.org/b07b352793031d9b13969c3efc71e3afb26f0cf0b365da466eddfde73073cc15", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/caseybreen/actions/runs/37602139666" }, { "r": "4.5.3", "os": "mac", "version": "0.1.2", "date": "2026-10-07T12:08:57.000Z", "commit": "21d43e207df7222e46366c06babe542aa4e93c00", "fileid": "https://r2.ropensci.org/764f5db26f4b3e39b92b9619e2e61ed65c3066eac6a62e87bdd8b4c414e7862a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/caseybreen/actions/runs/37602139666" }, { "r": "4.6.1", "os": "mac", "version": "0.1.2", "date": "2026-10-07T12:08:23.000Z", "commit": "21d43e207df7222e46366c06babe542aa4e93c00", "fileid": "https://r2.ropensci.org/42079333ba32b4ee8a1922d047997e6941bd4d38548b202055102a26bf91bdc4", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/caseybreen/actions/runs/37602139666" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.2", "date": "2026-10-07T09:52:23.000Z", "commit": "21d43e207df7222e46366c06babe542aa4e93c00", "fileid": "https://r2.ropensci.org/a022cd881da3b1ae493eb31ba7786739637ca97e7130b13bdd780805c7de472c", "status": "success", "buildurl": "https://github.com/r-universe/caseybreen/actions/runs/37602139666" }, { "r": "4.7.0", "os": "win", "version": "0.1.2", "date": "2026-10-07T09:51:36.000Z", "commit": "21d43e207df7222e46366c06babe542aa4e93c00", "fileid": "https://r2.ropensci.org/453dd6483e7fa3e6ba1e79562dccb874481e28c2fd12d4a8b569c33c28f1db59", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/caseybreen/actions/runs/37602139666" }, { "r": "4.5.3", "os": "win", "version": "0.1.2", "date": "2026-10-07T09:51:35.000Z", "commit": "21d43e207df7222e46366c06babe542aa4e93c00", "fileid": "https://r2.ropensci.org/7c8b38f11cf52caff9690fc8da0df50e0d447b3f87f5899e316f1a77257fb6f4", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/caseybreen/actions/runs/37602139666" }, { "r": "4.6.1", "os": "win", "version": "0.1.2", "date": "2026-10-07T09:52:14.000Z", "commit": "21d43e207df7222e46366c06babe542aa4e93c00", "fileid": "https://r2.ropensci.org/8e70600222ae701eee985f6c88de94d047bb0f6a425155acd352f49bfdbd2436", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/caseybreen/actions/runs/37602139666" } ] }